# Lindsey Montefiori - Jun 5, 2018
#PCHiC in iPSC and CM
#my data are indicated as comments, and [Washu URL] as place holder in the url:


[

#my data
{
"type":"bed",
"name":"iPSC TADs",
"url":"[Washu URL]/TADs-iPSC.bed.gz",
"mode":3,
"qtc":{"anglescale":1,"pr":255,"pg":0,"pb":0,"nr":0,"ng":0,"nb":230,"pth":"#800000","nth":"#000099","thtype":0,"thmin":0,"thmax":10,"thpercentile":95,"height":50,"summeth":1,
"textcolor":"#000000",
"fontsize":"8pt",
"fontfamily":"sans-serif",
"fontbold":false,
"bedcolor":"rgb(43, 153, 156)"},
"metadata":{}
},


#my data
{
"type":"bigwig",
"name":"iPSC RNA-seq",
"url":"[Washu URL]/RNAseq-iPSC.bw",
"mode":1,
"qtc":{"anglescale":1,"pr":0,"pg":0,"pb":0,"nr":255,"ng":0,"nb":0,"pth":"#000099","nth":"#800000","thtype":0,"thmin":0,"thmax":10,"thpercentile":90,"height":20,"summeth":1},
"metadata":{}
},

{
"type":"bigwig",
"name":"H3K27ac of H1",
"url":"http://egg.wustl.edu/d/hg19/GSM466732.bigWig",
"mode":1,
"qtc":{"anglescale":1,"pr":24,"pg":150,"pb":18,"nr":255,"ng":0,"nb":0,"pth":"rgb(0,0,105)","nth":"#800000","thtype":0,"thmin":0,"thmax":10,"thpercentile":90,"height":20,"summeth":1},
"metadata":{"md1":["11101"],"md3":["22019"],"md4":["30002"]},
"geolst":["GSM466732"]
},

{
"type":"bigwig",
"name":"H3K4me1 of H1",
"url":"http://egg.wustl.edu/d/hg19/GSM537679.bigWig",
"mode":1,
"qtc":{"anglescale":1,"pr":155,"pg":80,"pb":235,"nr":255,"ng":0,"nb":0,"pth":"rgb(0,93,46)","nth":"#800000","thtype":0,"thmin":0,"thmax":10,"thpercentile":90,"height":20,"summeth":1},
"metadata":{"md1":["11101"],"md3":["22010"],"md4":["30003"]},
"geolst":["GSM537679"]
},

{
"type":"bigwig",
"name":"H3K27me3 of H1",
"url":"http://egg.wustl.edu/d/hg19/GSM537683.bigWig",
"mode":1,"qtc":{"anglescale":1,"pr":255,"pg":0,"pb":0,"nr":255,"ng":0,"nb":0,"pth":"rgb(125,0,0)","nth":"#800000","thtype":0,"thmin":0,"thmax":10,"thpercentile":90,"height":20,"summeth":1},
"metadata":{"md1":["11101"],"md3":["22018"],"md4":["30003"]},
"geolst":["GSM537683"]},


#my data
{
"type":"bed",
"name":"H1 CTCF",
"url":"[Washu URL]/CTCF-H1.bed.gz",
"mode":6,
"qtc":{"anglescale":1,"pr":222,"pg":174,"pb":69,"nr":0,"ng":0,"nb":230,"pth":"rgb(222, 174, 69)","nth":"#000099","thtype":2,"thmin":0,"thmax":10,"thpercentile":0,"height":20,"summeth":1,"textcolor":"#000000","fontsize":"8pt","fontfamily":"sans-serif","fontbold":false,"bedcolor":"#336666"},
"metadata":{}
},


#my data
{
"type":"interaction",
"name":"iPSC PCHi-C interactions",
"url":"[Washu URL]/PCHiC-iPSC.txt.gz",
"mode":4,
"qtc":{"anglescale":1,"textcolor":"#000000","thtype":0,"fontsize":"8pt","fontfamily":"sans-serif","fontbold":false,"pr":43,"pg":153,"pb":156,"nr":0,"ng":99,"nb":133,"pcolorscore":41.6,"ncolorscore":0,"pfilterscore":0,"nfilterscore":0,"height":50},
"metadata":{}
},


#my data
{
"type":"bed",
"name":"CM TADs",
"url":"[Washu URL]/TADs-CM.bed.gz",
"mode":3,
"qtc":{"anglescale":1,"pr":255,"pg":0,"pb":0,"nr":0,"ng":0,"nb":230,"pth":"#800000","nth":"#000099","thtype":0,"thmin":0,"thmax":10,"thpercentile":95,"height":50,"summeth":1,"textcolor":"#000000","fontsize":"8pt","fontfamily":"sans-serif","fontbold":false,"bedcolor":"rgb(230, 39, 51)"},
"metadata":{}
},


#my data
{
"type":"bed",
"name":"CVD tag SNPs",
"url":"[Washu URL]/tagsnps.bed.gz",
"mode":6,
"qtc":{"anglescale":1,"pr":0,"pg":0,"pb":0,"nr":0,"ng":0,"nb":230,"pth":"rgb(0, 0, 0)","nth":"#000099","thtype":2,"thmin":0,"thmax":10,"thpercentile":0,"height":20,"summeth":1,"textcolor":"#000000","fontsize":"8pt","fontfamily":"sans-serif","fontbold":false,"bedcolor":"#336666"},
"metadata":{}
},


#my data
{
"type":"bed",
"name":"Arrhythmia LD SNPs",
"url":"[Washu URL]/LD-SNPs-arrhythmia.bed.gz",
"mode":6,
"qtc":{"anglescale":1,"pr":0,"pg":0,"pb":0,"nr":0,"ng":0,"nb":230,"pth":"rgb(0, 0, 0)","nth":"#000099","thtype":2,"thmin":0,"thmax":10,"thpercentile":0,"height":20,"summeth":1,"textcolor":"#000000","fontsize":"8pt","fontfamily":"sans-serif","fontbold":false,"bedcolor":"#336666"},
"metadata":{}
},


#my data
{
"type":"bed",
"name":"Heart failure LD SNPs",
"url":"[Washu URL]/LD-SNPs-heartfailure.bed.gz",
"mode":6,
"qtc":{"anglescale":1,"pr":0,"pg":0,"pb":0,"nr":0,"ng":0,"nb":230,"pth":"rgb(0, 0, 0)","nth":"#000099","thtype":2,"thmin":0,"thmax":10,"thpercentile":0,"height":20,"summeth":1,"textcolor":"#000000","fontsize":"8pt","fontfamily":"sans-serif","fontbold":false,"bedcolor":"#336666"},
"metadata":{}
},



#my data
{
"type":"bed",
"name":"Myocardial infarction LD SNPs",
"url":"[Washu URL]/LD-SNPs-infarction.bed.gz",
"mode":6,
"qtc":{"anglescale":1,"pr":0,"pg":0,"pb":0,"nr":0,"ng":0,"nb":230,"pth":"rgb(0, 0, 0)","nth":"#000099","thtype":2,"thmin":0,"thmax":10,"thpercentile":0,"height":20,"summeth":1,"textcolor":"#000000","fontsize":"8pt","fontfamily":"sans-serif","fontbold":false,"bedcolor":"#336666"},
"metadata":{}
},


#my data
{
"type":"bigwig",
"name":"CM RNA-seq",
"url":"[Washu URL]/RNAseq-CM.bw",
"mode":1,
"qtc":{"anglescale":1,"pr":0,"pg":0,"pb":0,"nr":255,"ng":0,"nb":0,"pth":"#000099","nth":"#800000","thtype":0,"thmin":0,"thmax":10,"thpercentile":90,"height":20,"summeth":1},
"metadata":{}
},


{
"type":"bigwig",
"name":"H3K27ac of Left Ventricle",
"url":"http://egg.wustl.edu/d/hg19/GSM908951_1.bigWig",
"mode":1,
"qtc":{"anglescale":1,"pr":24,"pg":150,"pb":18,"nr":255,"ng":0,"nb":0,"pth":"rgb(0,0,105)","nth":"#800000","thtype":0,"thmin":0,"thmax":10,"thpercentile":90,"height":20,"summeth":1},
"metadata":{"md1":["13210"],"md2":["40272","60001","70001"],"md3":["22019"],"md4":["30002"]},
"geolst":["GSM908951"]
},


{
"type":"bigwig",
"name":"H3K4me1 of Left Ventricle",
"url":"http://egg.wustl.edu/d/hg19/GSM910575_1.bigWig",
"mode":1,
"qtc":{"anglescale":1,"pr":155,"pg":80,"pb":235,"nr":255,"ng":0,"nb":0,"pth":"rgb(155, 80, 235)","nth":"#800000","thtype":0,"thmin":0,"thmax":24,"thpercentile":90,"height":20,"summeth":1},
"metadata":{"md1":["13210"],"md2":["40216","60001","70004"],"md3":["22010"],"md4":["30002"]},
"geolst":["GSM910575"]
},


{
"type":"bigwig",
"name":"H3K27me3 of Left Ventricle",
"url":"http://egg.wustl.edu/d/hg19/GSM908952_1.bigWig",
"mode":1,
"qtc":{"anglescale":1,"pr":255,"pg":0,"pb":0,"nr":255,"ng":0,"nb":0,"pth":"rgb(125,0,0)","nth":"#800000","thtype":0,"thmin":0,"thmax":10,"thpercentile":90,"height":20,"summeth":1},
"metadata":{"md1":["13210"],"md2":["40272","60001","70001"],"md3":["22018"],"md4":["30002"]},
"geolst":["GSM908952"]
},


#my data
{
"type":"bed","
name":"CTCF Human Cardiomyocyte",
"url":"[Washu URL]/CTCF-heart.bed.gz",
"mode":6,
"qtc":{"anglescale":1,"pr":222,"pg":174,"pb":69,"nr":0,"ng":0,"nb":230,"pth":"rgb(222, 174, 69)","nth":"#000099","thtype":2,"thmin":0,"thmax":10,"thpercentile":0,"height":20,"summeth":1,"textcolor":"#000000","fontsize":"8pt","fontfamily":"sans-serif","fontbold":false,"bedcolor":"#336666"},
"metadata":{}
},


#my data
{
"type":"interaction",
"name":"CM PCHi-C interactions",
"url":"[Washu URL]/PCHiC-CM.txt.gz",
"mode":4,
"qtc":{"anglescale":1,"textcolor":"#000000","thtype":0,"fontsize":"8pt","fontfamily":"sans-serif","fontbold":false,"pr":230,"pg":39,"pb":51,"nr":0,"ng":99,"nb":133,"pcolorscore":55.28,"ncolorscore":0,"pfilterscore":0,"nfilterscore":0,"height":50},
"metadata":{}
},



{
"type":"native_track",
"list":
	[
		{"name":"refGene","mode":3,"qtc":{"anglescale":1,"pr":255,"pg":0,"pb":0,"nr":0,"ng":0,"nb":230,"pth":"#800000","nth":"#000099","thtype":0,"thmin":0,"thmax":10,"thpercentile":95,"height":50,"summeth":1,"textcolor":"rgb(0, 46, 184)","fontsize":"8pt","fontfamily":"sans-serif","fontbold":false,"bedcolor":"rgb(0, 46, 184)"},
		"metadata":{},
		"details":{"source":"UCSC Genome Browser","download date":"Jan 1, 2012"}
		}

		]

},

{
"type":"metadata",
"vocabulary_set":{"md1":"http://vizhub.wustl.edu/metadata/human/Samples","md2":"http://vizhub.wustl.edu/metadata/human/Donor","md3":"http://vizhub.wustl.edu/metadata/Experimental_assays","md4":"http://vizhub.wustl.edu/metadata/Institutions"},
"show_terms":{"md1":["Sample"],"md3":["Assay"]}
},

{
"type":"coordinate_override",
"coord":"chr7,25700612,chr7,28637908"
}

]